Glyma08g01650 - SoyBase

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Report for Sequence Feature Glyma08g01650

Feature Type:	gene_model
Chromosome:	Gm08
Start:	1045191
stop:	1048004
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma08g01650

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT5G41190	AT	Annotation by Michelle Graham. TAIR10: CONTAINS InterPro DOMAIN/s: Nin one binding (NOB1) Zn-ribbon like (InterPro:IPR014881), D-site 20S pre-rRNA nuclease (InterPro:IPR017117); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). \| chr5:16487628-16490012 REVERSE LENGTH=602	SoyBase	E_val: 0	ISS
GO:0006606	GO-bp	Annotation by Michelle Graham. GO Biological Process: protein import into nucleus	SoyBase	N/A	ISS
GO:0008150	GO-bp	Annotation by Michelle Graham. GO Biological Process: biological process	SoyBase	N/A	ISS
GO:0005634	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: nucleus	SoyBase	N/A	ISS
GO:0003674	GO-mf	Annotation by Michelle Graham. GO Molecular Function: molecular function	SoyBase	N/A	ISS
PTHR12814	Panther	RNA-BINDING PROTEIN NOB1	JGI		ISS
PF08772	PFAM	Nin one binding (NOB1) Zn-ribbon like	JGI		ISS
UniRef100_G7LI13	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: RNA-binding protein NOB1 n=1 Tax=Medicago truncatula RepID=G7LI13_MEDTR	SoyBase	E_val: 0	ISS
UniRef100_UPI0002337CC7	UniRef	Annotation by Michelle Graham. Best UniRef hit: UPI0002337CC7 related cluster n=1 Tax=unknown RepID=UPI0002337CC7	SoyBase	E_val: 0	ISS

Expression Patterns of Glyma08g01650

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma08g01650

Paralog	Evidence	Comments
Glyma05g37950	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma08g01650 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.08g013300	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma08g01650

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Coding sequences of Glyma08g01650

Limit To All Plant Sequences

>Glyma08g01650.1   sequence type=CDS   gene model=Glyma08g01650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGAGGAAACTCCGTCTTCAGTTCCAGCGACGGCATCATGCTGGAGCAACGTGGTCAAGAAGCAGCCACCACCTCCACCGCAGCAGCACACCGAGCGAGTGTTGGTGGAAACCAGCGATTCCCCCAATGCCATCTCCGTAGCCGTCGTGGACGCCAACGCAGTCATCGAATCCGGCGAAAAGCTCCACGGCCTCGCCGACAAGTTCATCTCCATCCCCGAAGTCATGGAGGAAATCCGCGACCCCGTTTCCCGCCACAAACTCTCTTTCCTCCCCTTCACCATCCAAACCATGGAACCCTCCTCCGAATCCATCAACAAAGTTGTTAAATTTGCTAGGGCTACCGGTGACCTACAAACTCTTTCTGATGTTGATATCAAGCTCATAGCTTTGACTTATACTTTGGAGGGTCAAATTCATGGGACAAAACATATCAGGGATGCCCCTCCTCCTGTGCAAATGGTCAATGTGAAGAGGTTGCCTGAGAAGGACTTGCCTGGATGGGGTTCTAACGTGCCCAATTTGGATGAGTGGGAGGCGTTGGAACATGCCGAGGACGCGTCCAATTCCAATTCCAGGATCCTTCCTTTGCAGGACCTTAGCTTGAACATTGTTTCTCAAGATGAGCATTCTGTGGATGGTTCCGTGGAGCCTGTGAGTGAAGCTGATTTGGGGATTCAGGAGGGTGGTCAGAATGGTTTGACGAAGCCAAGGAGATATCTGCCTAAGAAAAAAGAGATAAAGATTGAGGGGAAGACGATGGTGGCTGATGGAATTGATGCGTCGCAGGGAGGGGTTGATGACAATGCTGGTGATTGGATGCCGGCTGTCAGTCGGAGTACTCATAGGAGATATCTAAGAAGGAAAGCTAGACGCGAGTATCACGAGTCGTTGTCAAGTAATCAAGATCAGCAAGAGTTGGAAGCAAATGTTGTTGATGGTAGTGTTGGTGAAGATGCTAGTGCTTTAAATCCGCCTGTTCATCAGAGGGATGAAGAACAACATATTGAAAATGCTGTGTTGGAGGATGGTAAGGTGGTTAAAGAGAACAAAGACAATGAAAGTATCTATGAAATTATGCAGCAAATGAGGCTGGAAGAAGGCTCACTTGAAGTTCTTGATGAGGAAAGTAAACCAAGTTCATTTCCTAAAGAACTCCAGTCAGACAATGCTGGATTGGTGGAAACCGCATCTGATGGCAATGCAACTGTGGTCAATAAACCATGTGACAGTGGGACAGATACAATTGATGGCCAATCAAATCAATTGGAGATTGCTAGCCAGACAAGTGAGGTTGCTGATTTTTCATGTGCAGATGATGATGATAGTGACCAAAGTTGGGTGGTTAGGTCTTTGTCTGAATCAAGTGTAGCCTGTATAACTGGTGACTTTGCAATGCAAAATGTTCTTCTACAAATGGGTTTACGCTTGCTGGCACCTGGAGGAACACAGATACACCAGCTGCACAGATGGATACTCAAGTGTCATGCCTGTTACACTGTTACTGGCGAGATTGGGAGGATTTTCTGTCCCAAATGTGGAAATGGTGGCACCTTAAGGAAGGTAGCTGTCACTGTTAATGAAAATGGAATAGTATTAGCTGCCCGTCGACCACGAGTTACATTACGTGGCACAAAGTTTTCATTGCCTTTACCCCAAGGTGGGAGGGATGCAGTCTCAAAGAACCTCATTCTCCGTGAAGATCAACTTCCTCATAGGGTACTTTATCCTAAAACGAAGAAAGCCAACAAGCAGGATGATGACTTCTTTACACCAGACAGTGTCTTCAGCCACCACACAGATAAGAAAGCTCCTTTCCAGCCTCCTGTAAGGAAAGCAATGGCAGTTTTCGGTGGGAGGAGAAATCCAAATGACAATCACTACTCACGCTCTAAGCATAAGTAG

Predicted protein sequences of Glyma08g01650

Limit To All Plant Sequences

>Glyma08g01650.1   sequence type=predicted peptide   gene model=Glyma08g01650   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MEETPSSVPATASCWSNVVKKQPPPPPQQHTERVLVETSDSPNAISVAVVDANAVIESGEKLHGLADKFISIPEVMEEIRDPVSRHKLSFLPFTIQTMEPSSESINKVVKFARATGDLQTLSDVDIKLIALTYTLEGQIHGTKHIRDAPPPVQMVNVKRLPEKDLPGWGSNVPNLDEWEALEHAEDASNSNSRILPLQDLSLNIVSQDEHSVDGSVEPVSEADLGIQEGGQNGLTKPRRYLPKKKEIKIEGKTMVADGIDASQGGVDDNAGDWMPAVSRSTHRRYLRRKARREYHESLSSNQDQQELEANVVDGSVGEDASALNPPVHQRDEEQHIENAVLEDGKVVKENKDNESIYEIMQQMRLEEGSLEVLDEESKPSSFPKELQSDNAGLVETASDGNATVVNKPCDSGTDTIDGQSNQLEIASQTSEVADFSCADDDDSDQSWVVRSLSESSVACITGDFAMQNVLLQMGLRLLAPGGTQIHQLHRWILKCHACYTVTGEIGRIFCPKCGNGGTLRKVAVTVNENGIVLAARRPRVTLRGTKFSLPLPQGGRDAVSKNLILREDQLPHRVLYPKTKKANKQDDDFFTPDSVFSHHTDKKAPFQPPVRKAMAVFGGRRNPNDNHYSRSKHK*

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